PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0560.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 249aa    MW: 27237.5 Da    PI: 4.71
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-1879129155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a++ a+++l+g
  SapurV1A.0068s0560.1.p  79 PVYSGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTADMAARAHDVAALALRG 129
                             68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1379129IPR001471AP2/ERF domain
SMARTSM003804.4E-2880143IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2080139IPR016177DNA-binding domain
PROSITE profilePS5103221.86580137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3180139IPR001471AP2/ERF domain
PRINTSPR003679.4E-88192IPR001471AP2/ERF domain
CDDcd000181.94E-2981139No hitNo description
PRINTSPR003679.4E-8103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDIFFSYSDQ NPIGSINLLP VIDEQECSYS SALSDSSITS SVTKGVQQAA FFSDEEVMLA  60
SRNPKKRAGR KKFRETRHPV YSGVRRRNSG KWVCEVREPN KKSRIWLGTF PTADMAARAH  120
DVAALALRGR SACLNFADSA WRLPVPASRD AKDIQKAAAE AAEAFRPEGC LGVDFTRTGE  180
EVEKVAETAA GELFYMDDEA DFGMPGLLAN IAEGMLLPPP NCWGCSGGDS WDTMENNDTD  240
MSLWSFSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514570.0EF151457.1 Populus trichocarpa C-repeat binding facor 2 (CBF2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321877.11e-150hypothetical protein POPTR_0015s13830g
SwissprotQ9FJ931e-76DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA9PL441e-150A9PL44_POPTR; C-repeat binding facor 2
STRINGPOPTR_0015s13830.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-62dehydration response element B1A